PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang07g03600.3
Common NameLR48_Vigan06g013700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 160aa    MW: 17377.6 Da    PI: 5.1961
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang07g03600.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-18250355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++g
  Vang07g03600.3  2 YRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFPTPEMAARAHDVAALTIKG 50
                    9****998.**********854...6**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-36164IPR001471AP2/ERF domain
PROSITE profilePS5103223.459158IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-21259IPR016177DNA-binding domain
CDDcd000181.48E-32260No hitNo description
PfamPF008475.9E-12250IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-31259IPR001471AP2/ERF domain
PRINTSPR003671.5E-10213IPR001471AP2/ERF domain
PRINTSPR003671.5E-102440IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MYRGVRMRQW GKWVSEIREP KKKSRIWLGT FPTPEMAARA HDVAALTIKG TSAFLNFPEL  60
ASYLPRPPTT SPKDIQAAAA EAAALNCDAQ PQARAQARAQ AQIMPDGDDA FLDLPDLLAD  120
SSQSAGGFGY SASWFVAAPE HLDSAFRLDD PPFPWDSSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-16258663ATERF1
3gcc_A5e-16258663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00436DAPTransfer from AT4G16750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014520020.11e-91PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ9SUK82e-45ERF39_ARATH; Ethylene-responsive transcription factor ERF039
TrEMBLA0A0S3T5D11e-114A0A0S3T5D1_PHAAN; Uncharacterized protein
TrEMBLA0A0L9UQ361e-114A0A0L9UQ36_PHAAN; Uncharacterized protein
STRINGGLYMA11G03790.12e-64(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-42ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]